fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G39610 (ORE1, AtNAC2, ANAC092, ATNAC6)

Alias ORE1, AtNAC2, ANAC092, ATNAC6
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1)
TAIR annotation Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. (.1)
Gene model
Gene model cDNA support
AT5G39610.1 38
Entry clone (w/o stop) RE_0654 RE_03G11_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10029: developmental processes ->regulation of seed germination
(P) 10150: developmental processes ->leaf senescence
(P) 10468: other metabolic processes ->regulation of gene expression
(P) 1900057: developmental processes ->positive regulation of leaf senescence
(P) 1902074: other biological processes ->response to salt
(P) 1904250: response to stress ->positive regulation of age-related resistance
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42542: response to stress ->response to hydrogen peroxide
(F) 42803: protein binding ->protein homodimerization activity
(P) 43068: other cellular processes ->positive regulation of programmed cell death
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48527: developmental processes ->lateral root development
(P) 51091: transcription,DNA-dependent ->positive regulation of sequence-specific DNA binding transcription factor activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6979: response to stress ->response to oxidative stress
(P) 7275: developmental processes ->multicellular organism development
(P) 90400: response to stress ->stress-induced premature senescence
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9737: other biological processes ->response to abscisic acid
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR164a: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'

miR164b: 3'-ACGTGCACGGGACGAAGAGGT-5'
5'--3'

miR164c: 3'-GCGTGCACGGGACGAAGAGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8
soybean 1 15 16
rice 1 4 5
sorghum 1 3 4
physcomitrella
Total 4 29 33
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
RLMSHQLALALYYYYV at 559/588 in sorghum Sb021597 (Type III)
CFTISGLNLNLGGAAS at 256/316 in poplar Pt005566 (Type III)
GMEQCMDLENYWPPY at 307/316 in poplar Pt005566 (Type III)
TLSGSGLNLNLGASPA at 280/376 in sorghum Sb006176 (Type III)
PFTLSGLNLNLGSSPA at 257/352 in rice Os034288 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        sepal fusion

         abnormal sepal (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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