fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G56840

Alias
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / CIRCADIAN CLOCK ASSOCIATED 1
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description myb-like transcription factor family protein (.1)
TAIR annotation myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1025 Blast hits to 1022 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 894; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G56840.1 9
Entry clone (w/o stop) RE_1465_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 3 4
rice
sorghum
physcomitrella
Total 2 3 5
Repression motif 
QTRVVRLFGVHLDTT at 26/233 in AT5G56840.1
SGNSGGLDLELKLASI at 209/233 in AT5G56840.1
Repression motif
in putative orthologs		 
LTCIFTLSLSLSLSFS at 47/383 in poplar Pt006699 (Type Ia)
VAGGVRLFGVQLDIS at 110/383 in poplar Pt006699 (Type Ia)
NVAVPDLELSLGASKS at 354/383 in poplar Pt006699 (Type Ia)
SFVGLRLFGVQLDTT at 30/261 in soybean Gm013343 (Type II)
QPAVLNLDLTLAAPKA at 227/261 in soybean Gm013343 (Type II)
SFVGLRLFGVQLDTT at 30/266 in soybean Gm013342 (Type Ia)
QPAVLNLDLTLAAPKA at 232/266 in soybean Gm013342 (Type Ia)
SFVGLRLFGVQLDST at 32/267 in soybean Gm020044 (Type II)
QVAVLNLDLTLAAPKA at 234/267 in soybean Gm020044 (Type II)
NFVGVRLFGVQLADI at 30/278 in soybean Gm000157 (Type II)
AAVVPDLELTLAVSKG at 240/278 in soybean Gm000157 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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