fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G67300 (ATMYB44, AtMYBr1)

Alias ATMYB44, AtMYBr1
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
TAIR annotation Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli. (.1)
Gene model
Gene model cDNA support
AT5G67300.1 270
Entry clone (w/o stop) IE_0023
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 2000022: other cellular processes ->regulation of jasmonic acid mediated signaling pathway
(P) 2000031: signal transduction ->regulation of salicylic acid mediated signaling pathway
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to abiotic or biotic stimulus ->defense response to bacterium
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 46686: other biological processes ->response to cadmium ion
(P) 50832: response to stress ->defense response to fungus
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 9414: response to stress ->response to water deprivation
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR8182: 3'-TTAGTTGTCTTTGCGTTGTGTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 2 1 3
soybean 1 5 6
rice 1 1 2
sorghum 2 2
physcomitrella
Total 2 10 1 13
Repression motif 
DDPPTSLSLSLPGADV at 192/305 in AT5G67300.1
Repression motif
in putative orthologs		 
NDPPTSLSLSLPGVGV at 188/297 in soybean Gm029895 (Type II)
VDPPTSLSLSLPGSIT at 195/311 in poplar Pt016180 (Type II)
CDPATSLSLSLPGFGS at 176/268 in soybean Gm047970 (Type II)
EDPLTSLSLSLPGLDH at 254/495 in sorghum Sb026904 (Type II)
NDPPTSLSLSLPGVDS at 254/368 in soybean Gm001934 (Type Ia)
NDPPTSLSLSLPGADS at 213/330 in poplar Pt037616 (Type II)
AGPATSLSLSLPGVES at 196/295 in soybean Gm011952 (Type II)
PPPATSLSLSLSLPGL at 204/319 in rice Os032654 (Type Ia)
PDPATSLSLSLPGFTV at 186/273 in soybean Gm039420 (Type II)
DDPLTSLSLSLSLPGF at 196/301 in rice Os006758 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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