fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G01030 (NGA3)

Alias NGA3
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBABI3VP1
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description NGATHA3, AP2/B3-like transcriptional factor family protein (.1)
TAIR annotation NGATHA3 (NGA3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G01500.1); Has 1380 Blast hits to 1379 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G01030.1 6
Entry clone (w/o stop) IE_0062
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1901371: developmental processes ->regulation of leaf morphogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48366: developmental processes ->leaf development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 1
rice
sorghum
physcomitrella
Total 1 1 3 5
Repression motif 
AGKRLRLFGVNMECG at 284/358 in AT1G01030.1
SSSSSALRLNLSTDHD at 319/358 in AT1G01030.1
Repression motif
in putative orthologs		 
VGKRLRLFGVNMECP at 335/405 in poplar Pt016365 (Type III)
VGKRLRLFGVNMECP at 258/328 in poplar Pt016367 (Type III)
AGKRLRLFGVNMDCP at 343/413 in poplar Pt038767 (Type II)
SGKRLRLFGVNMECA at 283/406 in soybean Gm008337 (Type Ib)
VGKRLRLFGVNMECP at 258/328 in poplar Pt016366 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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