fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G49480 (REM19, RTV1)

Alias REM19, RTV1
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFABI3/VP1 / ABSCISIC ACID-INSENSITIVE3
AtTFDBREM
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description related to vernalization1 1 (.1)
TAIR annotation related to vernalization1 1 (RTV1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18990.1); Has 354 Blast hits to 329 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G49480.1 124
Entry clone (w/o stop) RE_03G12_x RE_0794
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 34613: other biological processes ->cellular protein localization
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5886: plasma membrane ->plasma membrane
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9409: response to stress ->response to cold
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 5 6
rice
sorghum
physcomitrella
Total 2 6 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment