fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G50420 (SCL-3, SCL3)

Alias SCL-3, SCL3
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / SCARECROW
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description scarecrow-like 3 (.1)
TAIR annotation Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). (.1)
Gene model
Gene model cDNA support
AT1G50420.1 48
Entry clone (w/o stop) RE_0888
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9739: other biological processes ->response to gibberellin
(F) 989: other molecular functions ->transcription factor activity, transcription factor binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 6 7
rice 1 1
sorghum 1 1
physcomitrella 1 1 2
Total 5 9 14
Repression motif 
KMVHVIDLDASEPAQWLA at 167/482 in AT1G50420.1
Repression motif
in putative orthologs		 
SAVFDSLNLTLPQHCL at 444/549 in physcomitrella Pp005854 (Type Ia)
KMVHIIDLNSFEPAQWIN at 161/476 in poplar Pt031487 (Type II)
KMVHIIDLNSSEPAQWIN at 160/476 in poplar Pt010299 (Type II)
KMVHVIDLNAAGPAQWIA at 161/473 in soybean Gm029498 (Type II)
SAMFDSLDLTLPQHCL at 439/544 in physcomitrella Pp016701 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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