fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G52830 (SHY1, IAA6)

Alias SHY1, IAA6
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description SHORT HYPOCOTYL 1, indole-3-acetic acid 6 (.1)
TAIR annotation An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid. (.1)
Gene model
Gene model cDNA support
AT1G52830.1 8
Entry clone (w/o stop) IE_01E10
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9704: developmental processes ->de-etiolation
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 5 6
rice
sorghum
physcomitrella
Total 2 7 9
Repression motif 
ALEITELRLGLPGDNY at 11/189 in AT1G52830.1
Repression motif
in putative orthologs		 
GLEITELRLGLPDAEH at 12/187 in soybean Gm017314 (Type III)
HKGYSDLALALDKLFG at 104/187 in soybean Gm017314 (Type III)
LEITTELRLGLPGGEL at 13/187 in soybean Gm040797 (Type III)
HKGYSELALALEKFFG at 104/187 in soybean Gm040797 (Type III)
NLEATELRLGLPGTAT at 13/201 in poplar Pt001236 (Type III)
NLEATELRLGLPGSDE at 18/202 in soybean Gm004012 (Type III)
NLKATELRLGLPGTEE at 18/194 in soybean Gm055370 (Type III)
LEITTELRLGLPGGEL at 13/189 in soybean Gm038311 (Type III)
GLEITELRLGLPDAEH at 12/195 in soybean Gm022022 (Type II)
HKGYSDLALALDKLFG at 112/195 in soybean Gm022022 (Type II)
GLEITELRLGLPGSDD at 11/184 in poplar Pt010911 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment