fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G68510 (LBD42)

Alias LBD42
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 42 (.1)
TAIR annotation LOB domain-containing protein 42 (LBD42); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 41 (TAIR:AT3G02550.1); Has 393 Blast hits to 393 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G68510.1 6
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 3 5
soybean 1 2 3
rice 1 1
sorghum 1 3 4
physcomitrella
Total 1 4 8 13
Repression motif 
DINEVGLELRLG at 226/233 in AT1G68510.1
Repression motif
in putative orthologs		 
QSDDSDLSLELTLALV at 229/241 in poplar Pt034504 (Type II)
RTDDVGLELTLGFEPV at 301/345 in soybean Gm023557 (Type III)
EVHDAGLDLTLGLPPP at 256/307 in rice Os000273 (Type II)
RAAEDGLDLTLGLPLA at 261/297 in sorghum Sb007439 (Type II)
RNEIAGLGLDLALGLE at 174/221 in poplar Pt019114 (Type III)
SGNEIGLELTLGFEPV at 244/293 in soybean Gm051216 (Type III)
DGSDVRLDLTLGLVSE at 234/244 in poplar Pt042067 (Type Ia)
SNGISGLELGLDLTLG at 250/296 in poplar Pt000765 (Type III)
SNGISGLELGLDLTLG at 187/233 in poplar Pt000766 (Type III)
SGNEIGLELTLGFEPV at 239/288 in soybean Gm035214 (Type II)
EEEEVGLELTLGFEPV at 292/429 in sorghum Sb032897 (Type III)
ASSLIGLRLQLPAAGE at 325/429 in sorghum Sb032897 (Type III)
QPPPMGLDLTLGLLTS at 304/407 in sorghum Sb033188 (Type III)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment