Alias |
LHUS, AtBBX21, STH2 |
TF Classification |
|
TAIR short description |
long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) |
TAIR annotation |
salt tolerance homolog2 (STH2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT4G39070.1); Has 3177 Blast hits to 2249 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 43; Plants - 2068; Viruses - 0; Other Eukaryotes - 1046 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
IE_04G01 |
External link |
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Gene Ontology (GO) |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
(F) 8270: other binding |
->zinc ion binding |
(P) 9640: developmental processes |
->photomorphogenesis |
(P) 9641: response to abiotic or biotic stimulus |
->shade avoidance |
(F) 989: other molecular functions |
->transcription factor activity, transcription factor binding |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5' |
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|
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
2 |
|
3 |
soybean |
1 |
|
1 |
|
2 |
rice |
|
1 |
|
|
1 |
sorghum |
|
1 |
|
|
1 |
physcomitrella |
|
|
|
|
|
Total |
2 |
2 |
3 |
|
7 |
|
Repression motif |
|
Repression motif in putative orthologs |
ISPVFSLGLTLVLLSS at 8/461 in sorghum Sb027986 (Type Ib)
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
|
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Comment |
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