fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G78080 (CAF1, RAP2.4, WIND1)

Alias CAF1, RAP2.4, WIND1
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFAP2/EREBP / APETALA2
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description wound induced dedifferentiation 1, related to AP2 4 (.1)
TAIR annotation Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling. (.1)
Gene model
Gene model cDNA support
AT1G78080.1 321
Entry clone (w/o stop) RE_1045_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10017: signal transduction ->red or far-red light signaling pathway
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45595: other cellular processes ->regulation of cell differentiation
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6970: response to abiotic or biotic stimulus ->response to osmotic stress
(P) 71472: response to stress ->cellular response to salt stress
(P) 9409: response to stress ->response to cold
(P) 9414: response to stress ->response to water deprivation
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9611: response to stress ->response to wounding
(P) 9651: response to abiotic or biotic stimulus ->response to salt stress
(P) 9736: other cellular processes ->cytokinin-activated signaling pathway
(P) 9873: signal transduction ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 2 3 4 9
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
TSHPNLDLNFYTPTSTQM at 75/375 in poplar Pt036904 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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