fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G26580 (YAB5)

Alias YAB5
TF Classification
FioreDBYABBY (Click to show phylogenetic tree)
RARTFC2C2(Zn) / YABBY
AtTFDBC2C2-YABBY
PlnTFDBC2C2-YABBY (v3.0), C2C2-YABBY (v1.0)
DATFC2C2-YABBY
TAIR short description YABBY5, plant-specific transcription factor YABBY family protein (.1.2)
TAIR annotation YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G26580.1 21
AT2G26580.2 14
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1902183: other biological processes ->regulation of shoot apical meristem development
(P) 2000024: developmental processes ->regulation of leaf development
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 9 10
soybean 1 18 19
rice 1 6 7
sorghum 1 3 4
physcomitrella
Total 4 36 40
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MSSSSTLSLDLLPSSE at 6/213 in poplar Pt010908 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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