fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G43000 (ANAC042, JUB1, JUNGBRUNNEN1)

Alias ANAC042, JUB1, JUNGBRUNNEN1
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description NAC domain containing protein 42 (.1)
TAIR annotation NAC domain containing protein 42 (NAC042); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12910.1); Has 2932 Blast hits to 2927 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2932; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G43000.1 7
Entry clone (w/o stop) IE_03F11
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10120: other metabolic processes ->camalexin biosynthetic process
(P) 10150: developmental processes ->leaf senescence
(P) 1900056: developmental processes ->negative regulation of leaf senescence
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42538: response to abiotic or biotic stimulus ->hyperosmotic salinity response
(C) 5634: nucleus ->nucleus
(P) 5992: other cellular processes ->trehalose biosynthetic process
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6561: other metabolic processes ->proline biosynthetic process
(P) 7275: developmental processes ->multicellular organism development
(P) 9718: other metabolic processes ->anthocyanin-containing compound biosynthetic process
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 1 6
soybean 1 4 1 6
rice 1 1 1 3
sorghum 1 2 1 4
physcomitrella
Total 4 11 4 19
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ARLEDDLALGLSPLHN at 467/571 in sorghum Sb027648 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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