| Alias |
|
| TF Classification |
| FioreDB | C2H2ZnF (Click to show phylogenetic tree) |
| RARTF | |
| AtTFDB | C2H2 |
| PlnTFDB | |
| DATF | C2H2 |
|
| TAIR short description |
zinc finger (C2H2 type) family protein (.1) |
| TAIR annotation |
zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G16470.1); Has 86 Blast hits to 86 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
RE_01F05 |
| External link |
|
| Gene Ontology (GO) |
| (F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
| (C) 5634: nucleus |
->nucleus |
| (C) 5737: other cytoplasmic components |
->cytoplasm |
| (P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
| (P) 71452: response to stress |
->cellular response to singlet oxygen |
|
| miRNA/tasiRNA |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
1 |
|
2 |
|
3 |
| soybean |
1 |
|
1 |
|
2 |
| rice |
|
|
|
|
|
| sorghum |
1 |
|
|
|
1 |
| physcomitrella |
1 |
|
2 |
|
3 |
| Total |
4 |
|
5 |
|
9 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> done |
| Plasmid construction | -> done |
| Transformed | -> done |
| T1 seed harvested | -> done |
| T2 seed harvested | -> done |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
