fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G26620 (LBD23)

Alias LBD23
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 23 (.1)
TAIR annotation LOB domain-containing protein 23 (LBD23); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 24 (TAIR:AT3G26660.1); Has 984 Blast hits to 979 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 984; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G26620.1 2
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 29 30
soybean 1 44 45
rice 1 15 16
sorghum 1 16 17
physcomitrella 1 22 23
Total 5 126 131
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
FLNVHRLFGVSSILR at 80/351 in physcomitrella Pp028242 (Type III)
GAPPPRLRLRLLHLRP at 198/418 in sorghum Sb020619 (Type III)
FQNVHKLFGVSNILR at 47/321 in physcomitrella Pp011356 (Type III)
APSIPALHLRLPTALC at 247/337 in sorghum Sb032110 (Type III)
FANVHRLFGVSSILR at 50/275 in physcomitrella Pp011308 (Type III)
PNAHRTLELCLYTKIR at 35/594 in physcomitrella Pp007817 (Type III)
FLNVHRLFGVSSILR at 283/594 in physcomitrella Pp007817 (Type III)
FQNVHKLFGVSNILR at 47/332 in physcomitrella Pp034487 (Type III)
HAETAALQLQLQQQHQ at 111/156 in rice Os039759 (Type III)
FANVHKLFGVSNILR at 45/291 in physcomitrella Pp028663 (Type III)
NHIPHRLGLGLGGVLN at 55/260 in sorghum Sb008940 (Type III)
FQNVHKLFGVSNILR at 47/234 in physcomitrella Pp011357 (Type III)
FQNVHKLFGVSNILR at 44/207 in physcomitrella Pp018264 (Type III)
HAETAALQLQLQQQHQ at 111/156 in rice Os037274 (Type III)
FANVHKLFGVSNILR at 106/348 in physcomitrella Pp022462 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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