fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G47640 (PYE, bHLH047, POPEYE, PYE1)

Alias PYE, bHLH047, POPEYE, PYE1
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTF
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATF
TAIR short description POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
TAIR annotation Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots. (.1.2.3)
Gene model
Gene model cDNA support
AT3G47640.1 16
AT3G47640.2 12
AT3G47640.3 12
Entry clone (w/o stop) RE_01D10_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10106: response to stress ->cellular response to iron ion starvation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 55072: other biological processes ->iron ion homeostasis
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 1 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
DSLPGQLCLSLPQSSQ at 301/329 in sorghum Sb028823 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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