fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G02670 (ATIDD12)

Alias ATIDD12
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description indeterminate(ID)-domain 12 (.1)
TAIR annotation indeterminate(ID)-domain 12 (IDD12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 45871 Blast hits to 18418 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 43560; Fungi - 264; Plants - 729; Viruses - 2; Other Eukaryotes - 1316 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G02670.1 14
Entry clone (w/o stop) IE_04E11
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 22 24
soybean 1 2 39 42
rice 1 12 13
sorghum 1 12 13
physcomitrella 1 3 4
Total 1 7 88 96
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
SVAAAGLGLGLPCEDG at 445/517 in soybean Gm003166 (Type III)
HPVVDNLGLGLPCGSG at 353/421 in soybean Gm013956 (Type III)
GTAKSGLGLGLPCEDG at 414/494 in soybean Gm003165 (Type III)
ASLAAGLGLGLPCDGG at 424/505 in poplar Pt002416 (Type III)
HHSLLSLSLSLHNLSL at 23/856 in sorghum Sb031033 (Type III)
TTVAAGLGLGLPSSDV at 417/501 in poplar Pt040442 (Type III)
ASVTAGLGLGLPCDGG at 455/536 in poplar Pt036031 (Type III)
ASVPAGLGLGLPCDSS at 395/478 in soybean Gm001789 (Type III)
HPVVDNLGLGLLCGSG at 406/473 in soybean Gm008769 (Type III)
LRGFAGLGLGLPCEDG at 396/476 in soybean Gm044710 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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