fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G06634

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTF
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
TAIR annotation zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (TAIR:AT5G04240.1); Has 122259 Blast hits to 40339 proteins in 1149 species: Archae - 4; Bacteria - 49; Metazoa - 113567; Fungi - 3973; Plants - 533; Viruses - 41; Other Eukaryotes - 4092 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G06634.1 22
AT4G06634.2 18
AT4G06634.3 17
Entry clone (w/o stop) IE_0039
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1900150: response to abiotic or biotic stimulus ->regulation of defense response to fungus
(P) 1901000: response to stress ->regulation of response to salt stress
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6952: response to stress ->defense response
(P) 6970: response to stress ->response to osmotic stress
(P) 9414: response to abiotic or biotic stimulus ->response to water deprivation
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9646: response to abiotic or biotic stimulus ->response to absence of light
(P) 9651: response to abiotic or biotic stimulus ->response to salt stress
(P) 9737: other biological processes ->response to abscisic acid
(P) 9738: other cellular processes ->abscisic acid-activated signaling pathway
(P) 9788: other cellular processes ->negative regulation of abscisic acid-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1 2
sorghum 1 1 2
physcomitrella 1 1
Total 4 1 4 9
Repression motif 
YIHEYKLKLHLKREHP at 245/387 in AT4G06634.1
YIHEYKLKLHLKREHP at 207/349 in AT4G06634.2
YIHEYKLKLHLKREHP at 238/380 in AT4G06634.3
Repression motif
in putative orthologs		 
YIHEYKLKLHLRREHP at 249/375 in poplar Pt012415 (Type Ia)
YIHEYKLRLHLKREHP at 246/371 in soybean Gm012683 (Type Ia)
YIHEYKLNLHLKKEHP at 237/343 in rice Os008255 (Type II)
YIHEYKLNLHLRNSHA at 367/517 in physcomitrella Pp010943 (Type Ib)
YIHGYKLNLHLKTQHP at 316/516 in sorghum Sb032033 (Type II)
YIHSYKLNLHLKTQHP at 277/401 in rice Os019787 (Type Ia)
IVVPVRLCLCLSLLVC at 453/467 in sorghum Sb027338 (Type Ia)
YIHEYKLRLHLKREHP at 197/322 in soybean Gm021110 (Type II)
YIHEYKLKLHLRREHP at 250/378 in poplar Pt020579 (Type II)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment