fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G13980 (AT-HSFA5)

Alias AT-HSFA5
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
TAIR annotation member of Heat Stress Transcription Factor (Hsf) family (.1)
Gene model
Gene model cDNA support
AT4G13980.1 37
Entry clone (w/o stop) RE_0950_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella
Total 3 1 2 6
Repression motif 
QNFSNKLRLELSPADS at 254/466 in AT4G13980.1
GSFSCHLNLTLASAPL at 349/466 in AT4G13980.1
Repression motif
in putative orthologs		 
QDFPDKLRLELSPAVS at 252/490 in poplar Pt030726 (Type Ia)
GHISCQLNLSLASSPL at 356/490 in poplar Pt030726 (Type Ia)
QDFSNKLRLELSPAVS at 245/479 in soybean Gm012506 (Type Ia)
DSLSCQLNLTLASCPL at 344/479 in soybean Gm012506 (Type Ia)
QHFSDKLRLGLCPAMT at 257/475 in rice Os007911 (Type Ia)
GLLTCHLSLTLASCSM at 338/475 in rice Os007911 (Type Ia)
QDFSNKLRLELSPAVS at 243/477 in soybean Gm020902 (Type II)
DSLSCQLNLTLASCPL at 342/477 in soybean Gm020902 (Type II)
QDFSNKLRLELSPAVS at 247/485 in poplar Pt004556 (Type II)
GLISCQLNLTLASSAL at 351/485 in poplar Pt004556 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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