fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G06960 (TGA5, OBF5)

Alias TGA5, OBF5
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFTGA3
AtTFDBbZIP
PlnTFDBbZIP (v3.0), bZIP (v1.0)
DATFbZIP
TAIR short description TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2)
TAIR annotation Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element. (.1), Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element. (.2)
Gene model
Gene model cDNA support
AT5G06960.1 24
AT5G06960.2 19
Entry clone (w/o stop) RE_0362
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42802: protein binding ->identical protein binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9410: other biological processes ->response to xenobiotic stimulus
(P) 9814: response to stress ->defense response, incompatible interaction
(P) 9863: other cellular processes ->salicylic acid mediated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 12 13
soybean 1 37 38
rice 1 13 14
sorghum 1 10 11
physcomitrella 1 7 8
Total 5 79 84
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040102 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002327 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002327 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002326 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002326 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002325 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002325 (Type III)
QTTDQDLELKLLVEAG at 209/397 in rice Os019143 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040104 (Type III)
RIKLNQLELELQRARQ at 81/342 in physcomitrella Pp002328 (Type III)
SQGLEALQLSLSDTLS at 249/342 in physcomitrella Pp002328 (Type III)
QQAEDALSLGLEKLQQ at 230/326 in soybean Gm014775 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040103 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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