fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G13220 (JAS1, TIFY9, JAZ10, AT5G13220)

Alias JAS1, TIFY9, JAZ10, AT5G13220
TF Classification
FioreDBZIM (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBTify (v3.0), ZIM (v1.0)
DATFZIM
TAIR short description TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
TAIR annotation Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa. (.1), jasmonate-zim-domain protein 10 (JAZ10); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 1 (TAIR:AT1G19180.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). (.2), Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa, whereas RNAi constructs for At5g13220.3 increased MeJA sensitivity. This isoform modifies growth in response to wounding in a process that requires jasmonate signaling. (.3)
Gene model
Gene model cDNA support
AT5G13220.2 19
AT5G13220.1 18
AT5G13220.3 16
AT5G13220.4 14
Entry clone (w/o stop) IE_0018 IE_0026 IE_0027
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10112: response to stress ->regulation of systemic acquired resistance
(P) 1903507: other metabolic processes ->negative regulation of nucleic acid-templated transcription
(P) 2000022: signal transduction ->regulation of jasmonic acid mediated signaling pathway
(F) 3714: other molecular functions ->transcription corepressor activity
(F) 42803: protein binding ->protein homodimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6952: response to stress ->defense response
(P) 9611: response to stress ->response to wounding
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean
rice
sorghum
physcomitrella
Total 1 1 2
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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