fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G13330 (RAP2.6L)

Alias RAP2.6L
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFERF
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description related to AP2 6l (.1)
TAIR annotation encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. (.1)
Gene model
Gene model cDNA support
AT5G13330.1 21
Entry clone (w/o stop) RE_01C03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 19760: other cellular processes ->glucosinolate metabolic process
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 71497: response to abiotic or biotic stimulus ->cellular response to freezing
(P) 9414: response to abiotic or biotic stimulus ->response to water deprivation
(P) 9651: response to abiotic or biotic stimulus ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9737: other biological processes ->response to abscisic acid
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 5 7
soybean 1 11 12
rice 1 1 4 6
sorghum 1 3 4
physcomitrella 1 1 3 5
Total 4 4 26 34
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment