fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G40350 (ATMYB24)

Alias ATMYB24
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description myb domain protein 24 (.1)
TAIR annotation Myb24 transcription factor. Member of the R2R3 factor gene family. Induced by jasmonate. Involved in jasmonate response during stamen development. (.1)
Gene model
Gene model cDNA support
AT5G40350.1 10
Entry clone (w/o stop) RE_1455_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 48443: developmental processes ->stamen development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 80086: developmental processes ->stamen filament development
(P) 9740: signal transduction ->gibberellic acid mediated signaling pathway
(P) 9753: other biological processes ->response to jasmonic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
(P) 9867: signal transduction ->jasmonic acid mediated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 9 10
soybean 3 13 16
rice 2 5 7
sorghum 1 8 9
physcomitrella
Total 7 35 42
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QSEDEMDLRRGPWTVDE at 24/340 in soybean Gm023935 (Type III)
QSEDEMDLRRGPWTVDE at 23/341 in soybean Gm042133 (Type III)
SSEDEMDLRRGPWTVDE at 19/325 in soybean Gm019269 (Type III)
SCEDEMDLRRGPWTVDE at 19/322 in soybean Gm045910 (Type III)
LFPQGLDLQSMDPNTPWN at 282/322 in soybean Gm045910 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         abnormal stamen (direct input), 
         short internode (direct input), 
         bushy (direct input), 
         abnormal shaped leaf (direct input), 
         serrated leaf (direct input), 
         abnormal petal (direct input), 
         abnormal sepal (direct input), 
         abnormal carpel (direct input), 
         narrow leaf (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50047
           Torenia
           35S:AtCDS-SRDX
           2009-02-06
           flower bulk, 1 line 
           hyponastic leaves 
[Publication link]		
           
          

          

           ID50141
           Torenia
           AtAP1p:AtCDS-SRDX
           2011-03-05
            
           wavy petal 
[Publication link]		
           and more...
          

         

         

          Comment