fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G23380 (KNAT6S, KNAT6L, KNAT6)

Alias KNAT6S, KNAT6L, KNAT6
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / SHOOTMERISTEMLESS
AtTFDBHomeobox / KNOX I
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description KNOTTED1-like homeobox gene 6 (.1.2)
TAIR annotation homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. (.1.2)
Gene model
Gene model cDNA support
AT1G23380.1 11
AT1G23380.2 9
Entry clone (w/o stop) RE_0521_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10073: other biological processes ->meristem maintenance
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 2 3
rice 1 1 2
sorghum 1 1 2
physcomitrella
Total 4 4 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
SVSGQSLSLSLFPGKD at 183/341 in poplar Pt042564 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         sterile or low fertility (A20037, A20039), 
         short silique (A20037), 
         abnormal petal (A20037, A20039)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         early flowering, 
         abnormal leaf 
         (A20528-104)
         

         short pedicel 
         (A20528-122)
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50065
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 8 lines 
           no phenotype 
            
          

         

         

          Comment