fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G06040 (BBX24, STO)

Alias BBX24, STO
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDBOrphan
PlnTFDBOrphans (v3.0), Orphans (v1.0)
DATF
TAIR short description SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2)
TAIR annotation Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling. (.1), Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling. (.2)
Gene model
Gene model cDNA support
AT1G06040.1 234
AT1G06040.2 190
Entry clone (w/o stop) RE_03H07_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(P) 1902448: response to abiotic or biotic stimulus ->positive regulation of shade avoidance
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 3712: other molecular functions ->transcription cofactor activity
(P) 48573: response to abiotic or biotic stimulus ->photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 80167: response to abiotic or biotic stimulus ->response to karrikin
(F) 8270: other binding ->zinc ion binding
(P) 90351: developmental processes ->seedling development
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9640: developmental processes ->photomorphogenesis
(P) 9651: response to stress ->response to salt stress
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 3 4
rice 1 1
sorghum 1 1 2
physcomitrella
Total 4 4 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         tall height (direct input), 
         long hypocotyl (direct input), 
         aerial rosette (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         long hypocotyl 
         (A20090-2)
         

         long hypocotyl 
         (A20090-5)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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