fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G08290 (WIP3)

Alias WIP3
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description WIP domain protein 3 (.1)
TAIR annotation WIP domain protein 3 (WIP3); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 38493; Fungi - 119; Plants - 685; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G08290.1 4
Entry clone (w/o stop) RE_01F02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 7 9
soybean 1 3 14 18
rice 1 5 6
sorghum 1 5 6
physcomitrella 1 1 2
Total 2 7 32 41
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
AAVTVALHLGLPSTSD at 115/341 in soybean Gm030814 (Type III)
GGGCRRLRLRLRGGRR at 199/489 in sorghum Sb023456 (Type III)
TAVTVALHLGLPSTTT at 121/345 in soybean Gm041045 (Type III)
GSKAGSLMLRLPCYCC at 142/264 in soybean Gm055125 (Type III)
AAVTVALHLGLPSTSI at 114/341 in soybean Gm032862 (Type III)
ETVTVALHLGLPSPCS at 112/336 in poplar Pt011936 (Type III)
AEGDPMDLEAAAPTDDDA at 147/428 in sorghum Sb016295 (Type III)
KTVTVALHLGLPRLDS at 22/203 in poplar Pt030771 (Type III)
ETVTVALHLGLPSTTA at 124/350 in soybean Gm038084 (Type III)
QALVLRLRLRLQAQAI at 339/583 in sorghum Sb032678 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment