fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G10200 (WLIM1, SF3)

Alias WLIM1, SF3
TF Classification
FioreDBLIM (Click to show phylogenetic tree)
RARTFLIM-domain
AtTFDB
PlnTFDBLIM (v3.0), LIM (v1.0)
DATFLIM
TAIR short description WLIM1, GATA type zinc finger transcription factor family protein (.1)
TAIR annotation WLIM1; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 4354 Blast hits to 2727 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 3462; Fungi - 43; Plants - 506; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G10200.1 105
Entry clone (w/o stop) RE_1146
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 15629: other intracellular components ->actin cytoskeleton
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 3729: DNA or RNA binding ->mRNA binding
(F) 46872: other binding ->metal ion binding
(F) 51015: other binding ->actin filament binding
(P) 51017: cell organization and biogenesis ->actin filament bundle assembly
(C) 5737: other cytoplasmic components ->cytoplasm
(C) 5856: other intracellular components ->cytoskeleton
(C) 5886: plasma membrane ->plasma membrane
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR394b: 3'-CCTCCACCTGTCTTACGGTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 5 5 11
soybean 1 9 14 24
rice 1 4 5
sorghum 1 1 3 5
physcomitrella 1 2 3
Total 4 16 28 48
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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