fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G13290 (WIP6, DOT5)

Alias WIP6, DOT5
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1)
TAIR annotation Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development. (.1)
Gene model
Gene model cDNA support
AT1G13290.1 3
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10087: other biological processes ->phloem or xylem histogenesis
(P) 10305: developmental processes ->leaf vascular tissue pattern formation
(P) 10588: developmental processes ->cotyledon vascular tissue pattern formation
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(P) 48364: developmental processes ->root development
(P) 48367: developmental processes ->shoot system development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 8 9
soybean 1 3 17 21
rice 2 5 7
sorghum 2 5 7
physcomitrella 1 1 2
Total 2 8 36 46
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
TAVTVALHLGLPSTTT at 121/345 in soybean Gm041045 (Type III)
QALVLRLRLRLQAQAI at 339/583 in sorghum Sb032678 (Type III)
AAVTVALHLGLPSTSD at 115/341 in soybean Gm030814 (Type III)
AAVTVALHLGLPSTSI at 114/341 in soybean Gm032862 (Type III)
GGGCRRLRLRLRGGRR at 199/489 in sorghum Sb023456 (Type III)
KTVTVALHLGLPRLDS at 22/203 in poplar Pt030771 (Type III)
ETVTVALHLGLPSTTA at 124/350 in soybean Gm038084 (Type III)
ETVTVALHLGLPSPCS at 112/336 in poplar Pt011936 (Type III)
AEGDPMDLEAAAPTDDDA at 147/428 in sorghum Sb016295 (Type III)
GSKAGSLMLRLPCYCC at 142/264 in soybean Gm055125 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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