fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G24260 (AGL9, SEP3)

Alias AGL9, SEP3
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SEPALLATA1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
TAIR annotation Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. (.1.2.3)
Gene model
Gene model cDNA support
AT1G24260.2 52
AT1G24260.1 48
AT1G24260.3 42
Entry clone (w/o stop) RE_1154_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10093: developmental processes ->specification of floral organ identity
(P) 1708: other cellular processes ->cell fate specification
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48481: developmental processes ->plant ovule development
(P) 48833: developmental processes ->specification of floral organ number
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 2 14 16
rice 2 6 8
sorghum 1 6 7
physcomitrella
Total 6 28 34
Repression motif 
TETNKTLRLRLADGYQ at 168/250 in AT1G24260.1
TETNKTLRLRLADGYQ at 169/251 in AT1G24260.2
Repression motif
in putative orthologs		 
EANQERLHLALDPSLH at 202/225 in sorghum Sb003019 (Type III)
GDMNKQLRLKLEAEGF at 164/245 in soybean Gm017817 (Type III)
WGVCGSLSLSLCVCVC at 32/401 in sorghum Sb023523 (Type II)
GDMNKQLRLKLEAEGF at 164/245 in soybean Gm005933 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
no visible phenotype (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID28 Chrysanthemum 35S:AtCDS-SRDX 2005-08-18   eary flowering   
ID82 Gentiana AtACT2pro:AtCDS-SRDX 2006-03-30   no phenotype    
ID156 Pharbitis 35S:AtCDS-SRDX 2006-10-18 balloon mutant like   curled green petal, long sepal, carpel and stamen defective 
ID50017 Torenia 35S:AtCDS-SRDX 2005-08-18   deep-serrated petals, symmetric flower shape and petal color pattern, phenotypic variation 
ID50130 Rosa 35S:RhOrtholog-SRDX 2010-10-26   Leaf-like petals  and more...
ID50131 carnation 35S:RhOrtholog-SRDX 2010-10-26   variegated petal 
Comment