fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G25560 (EDF1, TEM1)

Alias EDF1, TEM1
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBABI3VP1
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)
TAIR annotation Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes. (.1)
Gene model
Gene model cDNA support
AT1G25560.1 139
Entry clone (w/o stop) IE_07G10
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48573: response to abiotic or biotic stimulus ->photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 1 4
rice 2 1 3
sorghum 1 1 1 3
physcomitrella
Total 3 6 3 12
Repression motif 
VQTVVRLFGVNIFNV at 313/361 in AT1G25560.1
Repression motif
in putative orthologs		 
PIQMVRLFGVNIFNV at 325/369 in poplar Pt042964 (Type II)
PVKAVRLFGVDLLTA at 347/393 in rice Os003376 (Type II)
PIQMVRLFGVNILKL at 351/401 in soybean Gm003570 (Type III)
PIQMVRLFGVNILKL at 335/384 in soybean Gm001006 (Type Ia)
EPRVVRLFGVDIAGG at 320/365 in rice Os000364 (Type II)
ARVVVKLFGVDIAGD at 305/317 in rice Os000363 (Type III)
EARVVRLFGVDIAGD at 418/557 in sorghum Sb024795 (Type III)
SGKMVRLFGVDLLKL at 297/342 in soybean Gm055124 (Type II)
PVQMVRLFGVNIFNV at 357/401 in poplar Pt035978 (Type Ia)
PVKAVRLFGVDLLTT at 374/428 in sorghum Sb032995 (Type Ia)
PVQMVRLFGVNLLKL at 311/351 in soybean Gm028283 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project narrow cotyledon, cotyledon fusion, shoot meristem
abnormal seedling (direct input), abnormal phyllotaxis (A21968), fused cotyledon (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment