fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G54830 (NF-YC3)

Alias NF-YC3
TF Classification
FioreDBCCAAT (Click to show phylogenetic tree)
RARTFCCAAT / HAP5 type
AtTFDBCCAAT-HAP5
PlnTFDBCCAAT (v3.0), CCAAT (v1.0)
DATFCCAAT-HAP5
TAIR short description "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
TAIR annotation "nuclear factor Y, subunit C3" (NF-YC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1367 Blast hits to 1367 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 368; Plants - 431; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G54830.1 66
AT1G54830.2 35
AT1G54830.3 29
Entry clone (w/o stop) RE_02A10
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10029: developmental processes ->regulation of seed germination
(P) 2000306: developmental processes ->positive regulation of photomorphogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 3712: other molecular functions ->transcription cofactor activity
(F) 46982: protein binding ->protein heterodimerization activity
(P) 48574: developmental processes ->long-day photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9740: signal transduction ->gibberellic acid mediated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8
soybean 1 9 10
rice 1 5 6
sorghum 1 4 5
physcomitrella 1 12 13
Total 5 37 42
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment