fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G68360

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDB
DATFC2H2
TAIR short description C2H2 and C2HC zinc fingers superfamily protein (.1)
TAIR annotation C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 6 (TAIR:AT1G67030.1); Has 1137 Blast hits to 1135 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1124; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G68360.1 14
Entry clone (w/o stop) IE_02G01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10090: cell organization and biogenesis ->trichome morphogenesis
(P) 19760: other metabolic processes ->glucosinolate metabolic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9736: other cellular processes ->cytokinin-activated signaling pathway
(P) 9740: other cellular processes ->gibberellic acid mediated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice 1 1
sorghum
physcomitrella
Total 1 2 1 4
Repression motif 
TTFDDGLGLDLHLSLA at 229/244 in AT1G68360.1
Repression motif
in putative orthologs		 
PSFDDKLSLDLHLSLS at 231/245 in poplar Pt041041 (Type II)
VPEDTCLGLDLQLSLA at 253/267 in rice Os000296 (Type Ib)
FDDAWGLDLHLSLAPA at 265/283 in soybean Gm029021 (Type Ib)
PNFDEKLGLDLHLSLA at 233/247 in poplar Pt033380 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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