fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G78600 (BBX22, DBB3, STH3, LZF1)

Alias BBX22, DBB3, STH3, LZF1
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDBC2C2-CO-like
PlnTFDBOrphans (v3.0), Orphans (v1.0)
DATF
TAIR short description SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2)
TAIR annotation light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1); Has 1826 Blast hits to 1364 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1701; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G78600.1 67
AT1G78600.2 51
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10099: response to abiotic or biotic stimulus ->regulation of photomorphogenesis
(P) 15995: other cellular processes ->chlorophyll biosynthetic process
(C) 16607: nucleus ->nuclear speck
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9641: response to abiotic or biotic stimulus ->shade avoidance
(P) 9658: cell organization and biogenesis ->chloroplast organization
(P) 9718: other metabolic processes ->anthocyanin-containing compound biosynthetic process
(F) 989: other molecular functions ->transcription factor activity, transcription factor binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 4 5
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 2 3 5 10
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         long hypocotyl (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         late flowering, 
         slow growth 
         (A20269-90)
         

         
         

         aerial rosette, 
         abnormal flowering or growth, 
         abnormal leaf, 
         abnormal flower 
         (A20229-16)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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