fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G01940 (SGR5, ATIDD15)

Alias SGR5, ATIDD15
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
TAIR annotation May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. (.1), May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. (.2), May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. (.3)
Gene model
Gene model cDNA support
AT2G01940.1 15
AT2G01940.3 14
AT2G01940.2 11
Entry clone (w/o stop) IE_07B10
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10031: other biological processes ->circumnutation
(P) 10601: other cellular processes ->positive regulation of auxin biosynthetic process
(P) 2000012: transport ->regulation of auxin polar transport
(P) 2000904: other metabolic processes ->regulation of starch metabolic process
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48444: developmental processes ->floral organ morphogenesis
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9590: response to abiotic or biotic stimulus ->detection of gravity
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9959: response to abiotic or biotic stimulus ->negative gravitropism
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 3 2 6
rice 1 1
sorghum 1 1 2
physcomitrella 1 1
Total 3 8 3 14
Repression motif 
TNSSNNLNLELQLLPL at 269/445 in AT2G01940.1
TNSSNNLNLELQLLPL at 180/356 in AT2G01940.2
TNSSNNLNLELQLLPL at 270/446 in AT2G01940.3
Repression motif
in putative orthologs		 
NKVHPNLELQLSNTTP at 256/380 in soybean Gm020360 (Type III)
AAHYHNLELQLSTASG at 261/456 in poplar Pt022676 (Type II)
KLLHPNLDLQLSTPTT at 251/439 in soybean Gm025128 (Type Ia)
GGVHHNLELQLMPPRG at 315/536 in sorghum Sb015948 (Type III)
SQQEHNLELQLLPSSS at 250/422 in poplar Pt033952 (Type II)
AAHYQNLELQLSTTSR at 261/455 in poplar Pt026756 (Type II)
RGGHHNLELQLMPPSC at 289/499 in sorghum Sb006007 (Type II)
STTSHNLELQLLPSST at 265/438 in soybean Gm020732 (Type II)
SQQEHNLELQLLPSSS at 250/393 in poplar Pt042165 (Type Ia)
KLLHPNLDLQLSTPTN at 285/506 in soybean Gm018077 (Type II)
Status
Plasmid construction -> The work interrupted(06Feb)
Plasmid construction -> The work interrupted(06Feb)
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment