Alias
ZAT11
TF Classification
TAIR short description
C2H2 and C2HC zinc fingers superfamily protein (.1)
TAIR annotation
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: cotyledon, root, petiole; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G53600.1); Has 5065 Blast hits to 4182 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 4138; Fungi - 12; Plants - 806; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). (.1)
Gene model
Entry clone (w/o stop)
RE_03D11_x
External link
Gene Ontology (GO)
(P) 10200: other biological processes
->response to chitin
(P) 2000280: developmental processes
->regulation of root development
(F) 3676: nucleic acid binding
->nucleic acid binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding
->metal ion binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent
->regulation of transcription, DNA-templated
(P) 71289: other cellular processes
->cellular response to nickel ion
(F) 8270: other binding
->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
2
rice
sorghum
physcomitrella
Total
1
1
1
3
Repression motif
SKRILSLDLNL TPLEN at 147/178 in AT2G37430.1
Repression motif in putative orthologs
SKRVLCLDLSL ALPMY at 168/198 in poplar Pt028209 (Type Ib)
TRVIMCLDLNL TPFEN at 143/173 in soybean Gm007347 (Type II)
TRVVTCLDLNL TPLEN at 144/171 in soybean Gm052410 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment