fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G13540 (ATMYB5, ATM2)

Alias ATMYB5, ATM2
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description myb domain protein 5 (.1)
TAIR annotation Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches). (.1)
Gene model
Gene model cDNA support
AT3G13540.1 13
Entry clone (w/o stop) RE_03C12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10026: other cellular processes ->trichome differentiation
(P) 10090: cell organization and biogenesis ->trichome morphogenesis
(P) 10214: developmental processes ->seed coat development
(P) 10468: other metabolic processes ->regulation of gene expression
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 48354: other metabolic processes ->mucilage biosynthetic process involved in seed coat development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
(P) 9845: developmental processes ->seed germination
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 12 20
soybean 1 15 16
rice 1 8 9
sorghum 1 6 7
physcomitrella 1 1
Total 4 8 41 53
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
LERCPDLNLELTISPP at 140/210 in soybean Gm008427 (Type III)
VHPNHKLNLELSIGLP at 220/318 in poplar Pt012921 (Type III)
PLKCPDLNLDLCISLP at 189/251 in rice Os034636 (Type III)
PPKCPDLNLDLCISPP at 161/243 in rice Os032444 (Type III)
SFPHHQLNLDLSIGLP at 203/301 in soybean Gm015390 (Type III)
LERCPDLNLELTISPP at 173/253 in soybean Gm032581 (Type III)
HERCPDLNLELTISPP at 157/235 in soybean Gm013657 (Type III)
EPRCPDLNLELSVGPT at 197/260 in rice Os021728 (Type III)
APRCPDLNLDLDLSVG at 194/269 in sorghum Sb009095 (Type III)
LERCPDLNLELTISPP at 170/246 in soybean Gm030520 (Type III)
VVGGIDLNLSLSPPTS at 196/215 in sorghum Sb016715 (Type III)
EPRCPDLNLELSVGPT at 197/260 in rice Os021729 (Type III)
QERCPDLNLELRISLP at 186/266 in poplar Pt018633 (Type III)
GEKCQELNLELRICPP at 168/245 in poplar Pt000910 (Type III)
VPRCPDLNLDLCISPP at 216/452 in sorghum Sb031046 (Type III)
QERCPDLNLELGISLP at 189/271 in poplar Pt021128 (Type III)
APRCPDLNLDLDLDLS at 205/287 in rice Os004951 (Type III)
SVPHHQLNLDLSIGLP at 210/302 in soybean Gm010386 (Type III)
QERCPDLNLELRISLP at 186/268 in poplar Pt018632 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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