fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G15540 (MSG2, IAA19)

Alias MSG2, IAA19
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description MASSUGU 2, indole-3-acetic acid inducible 19 (.1)
TAIR annotation Primary auxin-responsive gene. Involved in the regulation stamen filaments development. (.1)
Gene model
Gene model cDNA support
AT3G15540.1 42
Entry clone (w/o stop) RE_01D01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 80086: developmental processes ->stamen filament development
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9638: response to abiotic or biotic stimulus ->phototropism
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice
sorghum
physcomitrella
Total 2 4 6
Repression motif 
GLEITELRLGLPGRDV at 11/197 in AT3G15540.1
Repression motif
in putative orthologs		 
GLEITELRLGLPDAEH at 12/195 in soybean Gm022022 (Type Ia)
HKGYSDLALALDKLFG at 112/195 in soybean Gm022022 (Type Ia)
LEITTELRLGLPGGEL at 13/187 in soybean Gm040797 (Type II)
HKGYSELALALEKFFG at 104/187 in soybean Gm040797 (Type II)
GLEITELRLGLPGSDD at 11/184 in poplar Pt010911 (Type II)
LEITTELRLGLPGGEL at 13/189 in soybean Gm038311 (Type II)
GLEITELRLGLPDAEH at 12/187 in soybean Gm017314 (Type II)
HKGYSDLALALDKLFG at 104/187 in soybean Gm017314 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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