fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G54990 (SMZ)

Alias SMZ
TF Classification
FioreDBAP2_ERF (Click to show phylogenetic tree)
RARTFAP2/EREBP / APETALA2
AtTFDBAP2-EREBP
PlnTFDBAP2-EREBP (v3.0), AP2-EREBP (v1.0)
DATFAP2-EREBP
TAIR short description SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2)
TAIR annotation Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. (.1.2)
Gene model
Gene model cDNA support
AT3G54990.2 13
AT3G54990.1 9
Entry clone (w/o stop) IE_04F07_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9658: cell organization and biogenesis ->chloroplast organization
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR172a: 3'-TACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172b: 3'-TACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172c: 3'-GACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172d: 3'-GACGTCGTAGTAGTTCTAAGA-5'
5'--3'

miR172e: 3'-TACGTCGTAGTAGTTCTAAGG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice
sorghum
physcomitrella
Total 2 3 5
Repression motif 
MLDLNLKIFSS at 0/346 in AT3G54990.1
GNGHNDLELSLGISSS at 269/346 in AT3G54990.1
MLDLNLKIFSS at 0/247 in AT3G54990.2
Repression motif
in putative orthologs		 
MLDLNLGITYS at 1/506 in poplar Pt043227 (Type II)
GGSGHNLDLSLGISQP at 338/506 in poplar Pt043227 (Type II)
MLDLNLNAEST at 1/485 in soybean Gm041159 (Type III)
EGGSHDLDLNLGIATP at 306/485 in soybean Gm041159 (Type III)
MLDLNLNAEST at 1/388 in soybean Gm041160 (Type III)
EGGSHDLDLNLGIATP at 306/388 in soybean Gm041160 (Type III)
MLDLNLGISSS at 1/487 in poplar Pt035370 (Type III)
GGSGHNLDLSLGISQP at 322/487 in poplar Pt035370 (Type III)
MLDLNLTAEST at 1/476 in soybean Gm037963 (Type II)
EGGSHDLDLSLGIATP at 306/476 in soybean Gm037963 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment