fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G02590 (bHLH059, UNE12)

Alias bHLH059, UNE12
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / TRANSPARENT TESTA8
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
TAIR annotation unfertilized embryo sac 12 (UNE12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G03040.1); Has 2959 Blast hits to 2953 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 7; Plants - 2922; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G02590.1 132
AT4G02590.3 80
AT4G02590.2 73
Entry clone (w/o stop) RE_03D04_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1046: DNA or RNA binding ->core promoter sequence-specific DNA binding
(F) 1228: transcription factor activity ->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
(P) 31347: response to stress ->regulation of defense response
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6366: transcription,DNA-dependent ->transcription from RNA polymerase II promoter
(P) 7275: developmental processes ->multicellular organism development
(P) 9567: other biological processes ->double fertilization forming a zygote and endosperm
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR447a: 3'-TTATGATGTTAAAGAAGGTAT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 7 8
rice 1 1
sorghum 1 1 2
physcomitrella
Total 4 10 14
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
HAPPYQLGLSLDQGKG at 53/286 in soybean Gm004016 (Type III)
GDQPFSLALSLDAAAA at 43/294 in rice Os015355 (Type II)
HAPPYQLGLSLDQGKG at 62/283 in soybean Gm026652 (Type III)
HAPVYQLGLSLEQGKG at 70/292 in soybean Gm007179 (Type III)
HAPVYQLGLSLDQGKG at 70/292 in soybean Gm052263 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment