fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G24470 (GATA25, TIFY1, ZIM)

Alias GATA25, TIFY1, ZIM
TF Classification
FioreDBGATA (Click to show phylogenetic tree)
RARTFC2C2(Zn) / GATA
AtTFDBC2C2-Gata
PlnTFDBC2C2-GATA (v3.0), C2C2-GATA (v1.0)
DATFZIM
TAIR short description Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3)
TAIR annotation ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif. (.1), ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif. (.2), ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif. (.3)
Gene model
Gene model cDNA support
AT4G24470.1 61
AT4G24470.3 46
AT4G24470.2 35
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1085: protein binding ->RNA polymerase II transcription factor binding
(F) 1228: transcription factor activity ->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
(P) 30154: other cellular processes ->cell differentiation
(F) 3682: other binding ->chromatin binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5667: other intracellular components ->transcription factor complex
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7623: other biological processes ->circadian rhythm
(F) 8270: other binding ->zinc ion binding
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 2 3
rice
sorghum
physcomitrella
Total 2 2 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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