fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G38620 (AtMYB4)

Alias AtMYB4
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description myb domain protein 4 (.1)
TAIR annotation Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2. (.1)
Gene model
Gene model cDNA support
AT4G38620.1 49
Entry clone (w/o stop) IE_0074
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10224: response to abiotic or biotic stimulus ->response to UV-B
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 1903086: other cellular processes ->negative regulation of sinapate ester biosynthetic process
(P) 2000762: other metabolic processes ->regulation of phenylpropanoid metabolic process
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 2 10
soybean 4 5 9
rice 1 6 7
sorghum 1 2 2 5
physcomitrella
Total 3 19 9 31
Repression motif 
QEKFPDLNLELRISLP at 196/282 in AT4G38620.1
Repression motif
in putative orthologs		 
PLKCPDLNLDLCISLP at 189/251 in rice Os034636 (Type Ia)
LERCPDLNLELTISPP at 170/246 in soybean Gm030520 (Type II)
QERCPDLNLELRISLP at 186/266 in poplar Pt018633 (Type II)
EPRCPDLNLELSVGPT at 197/260 in rice Os021728 (Type II)
EPRCPDLNLELSVGPT at 197/260 in rice Os021729 (Type II)
LERCPDLNLELTISPP at 173/253 in soybean Gm032581 (Type III)
SVPHHQLNLDLSIGLP at 210/302 in soybean Gm010386 (Type II)
VPRCPDLNLDLCISPP at 216/452 in sorghum Sb031046 (Type III)
LERCPDLNLELTISPP at 140/210 in soybean Gm008427 (Type III)
HERCPDLNLELTISPP at 157/235 in soybean Gm013657 (Type III)
SFPHHQLNLDLSIGLP at 203/301 in soybean Gm015390 (Type II)
VVGGIDLNLSLSPPTS at 196/215 in sorghum Sb016715 (Type II)
PPKCPDLNLDLCISPP at 161/243 in rice Os032444 (Type II)
APRCPDLNLDLDLDLS at 205/287 in rice Os004951 (Type II)
QERCPDLNLELGISLP at 189/271 in poplar Pt021128 (Type II)
HERCPDLNLELTISPP at 150/228 in soybean Gm013658 (Type III)
GEKCQELNLELRICPP at 177/254 in poplar Pt000909 (Type II)
LERCPDLNLELTISPP at 133/203 in soybean Gm008428 (Type III)
GEKCQELNLELRICPP at 168/245 in poplar Pt000910 (Type II)
VHPNHKLNLELSIGLP at 220/318 in poplar Pt012921 (Type II)
QERCPDLNLELRISLP at 186/268 in poplar Pt018632 (Type Ia)
APRCPDLNLDLDLSVG at 194/269 in sorghum Sb009095 (Type II)
QCTLPDLNLDLTMSIP at 182/226 in poplar Pt034304 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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