fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G11260 (TED5, HY5)

Alias TED5, HY5
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFbZIP / ABSCISIC ACID-INSENSITIVE5
AtTFDBbZIP
PlnTFDBbZIP (v3.0), bZIP (v1.0)
DATFbZIP
TAIR short description REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
TAIR annotation Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. (.1)
Gene model
Gene model cDNA support
AT5G11260.1 32
Entry clone (w/o stop) RE_01E12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10017: response to abiotic or biotic stimulus ->red or far-red light signaling pathway
(P) 10099: developmental processes ->regulation of photomorphogenesis
(P) 10114: response to abiotic or biotic stimulus ->response to red light
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(P) 10224: response to abiotic or biotic stimulus ->response to UV-B
(P) 31539: other metabolic processes ->positive regulation of anthocyanin metabolic process
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3690: DNA or RNA binding ->double-stranded DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42753: other biological processes ->positive regulation of circadian rhythm
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 80167: response to abiotic or biotic stimulus ->response to karrikin
(P) 9585: signal transduction ->red, far-red light phototransduction
(P) 9640: developmental processes ->photomorphogenesis
(P) 9737: other biological processes ->response to abscisic acid
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9740: signal transduction ->gibberellic acid mediated signaling pathway
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9787: signal transduction ->regulation of abscisic acid-activated signaling pathway
(P) 9958: response to abiotic or biotic stimulus ->positive gravitropism
(P) 9963: other metabolic processes ->positive regulation of flavonoid biosynthetic process
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice 1 1 2
sorghum 1 2 3
physcomitrella 1 3 4
Total 5 8 13
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
IRRVPELGLELPGAST at 42/168 in sorghum Sb009872 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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