fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G13180 (VNDIP2, ANAC083, VNI2)

Alias VNDIP2, ANAC083, VNI2
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description VND-interacting 2, NAC domain containing protein 83 (.1)
TAIR annotation Encodes a NAC domain transcription factor that interacts with VND7 and negatively regulates xylem vessel formation. (.1)
Gene model
Gene model cDNA support
AT5G13180.1 88
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10089: other biological processes ->xylem development
(P) 10150: developmental processes ->leaf senescence
(P) 16032: other biological processes ->viral process
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9651: response to abiotic or biotic stimulus ->response to salt stress
(P) 9737: other biological processes ->response to abscisic acid
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5020a: 3'-ACGTTCAGAGTGGAAGAAGGT-5'
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 4 53 58
soybean 1 5 73 79
rice 2 29 31
sorghum 2 25 27
physcomitrella 1 17 18
Total 2 14 197 213
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
INGQEIDLDIIPEIDLY at 33/241 in poplar Pt022681 (Type III)
TLSGSGLNLNLGASPA at 280/376 in sorghum Sb006176 (Type III)
CFTVSGLNLNLGGATS at 259/334 in poplar Pt009519 (Type III)
GMQQCMDLENYWPAY at 325/334 in poplar Pt009519 (Type III)
DVIREIDLNKLEPWDLKD at 45/359 in rice Os007249 (Type III)
DVIREIDLNKLEPWDLKE at 85/509 in sorghum Sb033864 (Type III)
PFTLSGLNLNLGSSPA at 257/352 in rice Os034288 (Type III)
RLMSHQLALALYYYYV at 559/588 in sorghum Sb021597 (Type III)
NNDDYDLGLQLENAFD at 244/295 in soybean Gm015354 (Type III)
PKWNDDLDLKLENAFD at 240/291 in soybean Gm010412 (Type III)
CFTISGLNLNLGGAAS at 256/316 in poplar Pt005566 (Type III)
GMEQCMDLENYWPPY at 307/316 in poplar Pt005566 (Type III)
GTANRRLMLQLSESLS at 462/729 in rice Os030211 (Type III)
DVIREIDLNKLEPWDLKD at 45/359 in rice Os007248 (Type III)
ARLEDDLALGLSPLHN at 467/571 in sorghum Sb027648 (Type III)
RAIAEIDLNKCEPWELPE at 58/373 in rice Os024821 (Type III)
GFTISGLNLNLGGGGA at 254/338 in soybean Gm014469 (Type III)
GVDHCMDLDNYWPSY at 329/338 in soybean Gm014469 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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