fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT5G18550
Alias
TF Classification
FioreDB
C3HZnF
(Click to show phylogenetic tree)
RARTF
C3H-type 1(Zn)
/ putative zinc finger protein
AtTFDB
C2H2
PlnTFDB
C3H
(v3.0), C3H (v1.0)
DATF
C3H
TAIR short description
Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
TAIR annotation
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G06410.1); Has 2990 Blast hits to 1278 proteins in 210 species: Archae - 0; Bacteria - 30; Metazoa - 599; Fungi - 302; Plants - 1043; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT5G18550.1
42
Entry clone (w/o stop)
RE_0678_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding
->nucleic acid binding
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3729: DNA or RNA binding
->mRNA binding
(F) 46872: other binding
->metal ion binding
(C) 5634: nucleus
->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
2
soybean
1
1
9
11
rice
1
3
4
sorghum
1
1
2
physcomitrella
Total
1
4
14
19
Repression motif
Repression motif
in putative orthologs
GLEGP
MLRLGL
DGGGE at 41/646 in sorghum
Sb024977
(Type II)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment