Alias
TF Classification
TAIR short description
Exonuclease family protein (.1)
TAIR annotation
Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 1160 Blast hits to 1160 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 364; Plants - 225; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). (.1)
Gene model
Entry clone (w/o stop)
External link
Gene Ontology (GO)
(F) 4527: hydrolase activity
->exonuclease activity
(C) 5622: other intracellular components
->intracellular
(C) 5634: nucleus
->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
2
3
soybean
1
2
3
rice
2
2
sorghum
2
2
physcomitrella
Total
6
4
10
Repression motif
Repression motif in putative orthologs
SQQGCQLCLAL FDSPG at 82/366 in soybean Gm040920 (Type III)
SQQGCQLCLAL FDSPG at 82/366 in soybean Gm038206 (Type III)
SAQGCDLCLKL YDSPS at 83/357 in poplar Pt038564 (Type III)
SAQGCDLCLKL YDSPS at 83/349 in poplar Pt038565 (Type III)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment