fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G57520 (ATZFP2, ZFP2)

Alias ATZFP2, ZFP2
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description zinc finger protein 2 (.1)
TAIR annotation Encodes a zinc finger protein containing only a single zinc finger. (.1)
Gene model
Gene model cDNA support
AT5G57520.1 6
Entry clone (w/o stop) RE_01F07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 60862: developmental processes ->negative regulation of floral organ abscission
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice
sorghum
physcomitrella
Total 1 1 1 3
Repression motif 
YQPNTSLRLSLPSYKN at 7/150 in AT5G57520.1
HQLNLELVLEPS at 19/150 in AT5G57520.1
DQEKSHLDLSLRL at 142/150 in AT5G57520.1
Repression motif
in putative orthologs		 
HDDENHLNLDLLLEPS at 20/136 in soybean Gm046246 (Type Ib)
FQPNTSLHLSLPSNQL at 8/126 in poplar Pt009061 (Type Ia)
QEELSQLDLSLRL at 119/126 in poplar Pt009061 (Type Ia)
FQPNTSLHLSLPSNQL at 8/169 in poplar Pt006308 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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