fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G65670 (IAA9)

Alias IAA9
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFAux/IAA
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description indole-3-acetic acid inducible 9 (.1.2)
TAIR annotation auxin (indole-3-acetic acid) induced gene (.1), auxin (indole-3-acetic acid) induced gene (.2)
Gene model
Gene model cDNA support
AT5G65670.1 162
AT5G65670.2 144
Entry clone (w/o stop) RE_0190_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10583: other biological processes ->response to cyclopentenone
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: other cellular processes ->auxin-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR319c: 3'-TCCTCGAGGGAAGTCAGGTTT-5'
5'--3'

miR5998: 3'-TGTTTTGTTTTGTGTTTGACA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 16 17
rice
sorghum
physcomitrella
Total 2 18 20
Repression motif 
SLKATELTLGLPGSQS at 66/338 in AT5G65670.1
SLKATELTLGLPGSQS at 66/336 in AT5G65670.2
Repression motif
in putative orthologs		 
NLKATELRLGLPGSQS at 41/315 in soybean Gm001067 (Type II)
NLKATELRLGLPGSQS at 74/350 in soybean Gm022673 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000353 (Type III)
NLKATELRLGLPGSQS at 72/339 in soybean Gm014604 (Type III)
NMKETELRLGLPGSQS at 66/335 in poplar Pt030401 (Type III)
NLKATELRLGLPGLQS at 72/367 in soybean Gm040251 (Type III)
NLKETELRLGLPGYQS at 60/349 in poplar Pt011954 (Type III)
NLKETELRLGLPGCES at 41/319 in soybean Gm040859 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004720 (Type III)
NLKATELRLGLPGFQS at 72/347 in soybean Gm025448 (Type III)
NLKATELRLGLPGFQS at 72/348 in soybean Gm025447 (Type III)
NLKETELRLGLPGCES at 32/307 in soybean Gm038262 (Type III)
NLKATELRLGLPGFQS at 72/354 in soybean Gm025446 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000354 (Type III)
NLKATELRLGLPGSQS at 72/360 in soybean Gm009377 (Type III)
NLKATELRLGLPGSQS at 72/366 in poplar Pt039771 (Type II)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004717 (Type III)
NLKATELRLGLPGSQS at 72/366 in soybean Gm004719 (Type III)
NLKATELRLGLPGSQS at 77/359 in soybean Gm000355 (Type III)
NLKETELRLGLPGCES at 41/314 in soybean Gm040862 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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