fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G30130 (PCK1, LBD12, ASL5)

Alias PCK1, LBD12, ASL5
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
TAIR annotation Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. (.1)
Gene model
Gene model cDNA support
AT2G30130.1 5
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10016: developmental processes ->shoot system morphogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 21 25
soybean 1 4 31 36
rice 1 2 9 12
sorghum 1 1 9 11
physcomitrella 2 8 10
Total 4 12 78 94
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
HAETAALQLQLQQQHQ at 111/156 in rice Os039759 (Type II)
NHIPHRLGLGLGGVLN at 55/260 in sorghum Sb008940 (Type III)
HAETAALQLQLQQQHQ at 111/156 in rice Os037274 (Type II)
GAPPPRLRLRLLHLRP at 198/418 in sorghum Sb020619 (Type III)
APSIPALHLRLPTALC at 247/337 in sorghum Sb032110 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> no transformant(2011.12.14AKITA)

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50077
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, not obtained  
            
            
          

         

         

          Comment