Alias
TF Classification
TAIR short description
Exonuclease family protein (.1.2.3.4)
TAIR annotation
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). (.1)
Gene model
Entry clone (w/o stop)
External link
Gene Ontology (GO)
(F) 3676: nucleic acid binding
->nucleic acid binding
(F) 4527: hydrolase activity
->exonuclease activity
(C) 5622: other intracellular components
->intracellular
(C) 5634: nucleus
->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
2
3
soybean
1
2
3
rice
1
1
sorghum
1
1
2
physcomitrella
Total
4
5
9
Repression motif
Repression motif in putative orthologs
SQQGCQLCLAL FDSPG at 82/366 in soybean Gm038206 (Type II)
SAQGCDLCLKL YDSPS at 83/349 in poplar Pt038565 (Type III)
SQQGCQLCLAL FDSPG at 82/366 in soybean Gm040920 (Type III)
SAQGCDLCLKL YDSPS at 83/357 in poplar Pt038564 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment