fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G04240 (IAA3, SHY2)

Alias IAA3, SHY2
TF Classification
FioreDBAUX_IAA (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDB
PlnTFDBAUX/IAA (v3.0), AUX/IAA (v1.0)
DATFAUX-IAA
TAIR short description SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1)
TAIR annotation SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. (.1)
Gene model
Gene model cDNA support
AT1G04240.1 53
Entry clone (w/o stop) RE_01C07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10583: other biological processes ->response to cyclopentenone
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 17 18
soybean 3 20 23
rice 1 7 8
sorghum 1 1 2
physcomitrella
Total 2 5 44 51
Repression motif
NLKETELRLGLPGTDN at 10/189 in AT1G04240.1
Repression motif
in putative orthologs
NLKETELCLGLPGGGG at 76/306 in soybean Gm055369 (Type III)
FSETVDLKLNLHSKED at 115/306 in soybean Gm055369 (Type III)
NFEETELRLGLPGNDS at 8/227 in soybean Gm055526 (Type III)
ETASVDLKLNLSSCIN at 36/227 in soybean Gm055526 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001128 (Type III)
NLKETELRLGLPGCES at 41/314 in soybean Gm040862 (Type III)
NLKATELRLGLPGLQS at 72/367 in soybean Gm040251 (Type III)
NLKATELRLGLPGSDE at 17/199 in poplar Pt039373 (Type III)
LTNEHGLSLNLKETEL at 10/239 in soybean Gm028045 (Type III)
FSETVDLKLNLQTKED at 47/239 in soybean Gm028045 (Type III)
NLKATELRLGLPGTEE at 18/194 in soybean Gm055370 (Type II)
DLKGTELRLGLPGSHS at 32/257 in rice Os020689 (Type III)
NLKATELRLGLPGSQS at 72/366 in poplar Pt039771 (Type III)
NLKETELRLGLPGTGC at 17/226 in poplar Pt040946 (Type III)
NLKATELRLGLPGTSC at 122/297 in poplar Pt035517 (Type III)
GLEITELRLGLPDAEH at 12/187 in soybean Gm017314 (Type III)
HKGYSDLALALDKLFG at 104/187 in soybean Gm017314 (Type III)
NFEETELRLGLPGGSA at 8/231 in soybean Gm027863 (Type III)
ETASVDLKLNLSSSDD at 43/231 in soybean Gm027863 (Type III)
GFEETELRLGLPGNVG at 17/254 in soybean Gm007181 (Type III)
SATTVDLMLNLSSKEA at 58/254 in soybean Gm007181 (Type III)
NYKETELCLGLPGAVG at 19/248 in poplar Pt042254 (Type III)
FAETVDLKLNLQAKEG at 51/248 in poplar Pt042254 (Type III)
RFEETELRLGLPGNGG at 15/237 in poplar Pt001264 (Type III)
FSETVDLKLNLSSKEG at 44/237 in poplar Pt001264 (Type III)
GFEETELRLGLPGNGG at 16/252 in soybean Gm052267 (Type III)
SATTVDLMLNLSSKEA at 53/252 in soybean Gm052267 (Type III)
GFEETELRLGLPGNGG at 15/237 in poplar Pt039463 (Type III)
FSETVDLKLKLSSKES at 42/237 in poplar Pt039463 (Type III)
NLKATELRLGLPGCDE at 15/206 in soybean Gm007180 (Type III)
NLKETELRLGLPGCES at 41/319 in soybean Gm040859 (Type III)
NLKATELRLGLPGCDE at 14/181 in soybean Gm052265 (Type III)
NFEETELRLGLPLSGN at 17/230 in soybean Gm053213 (Type III)
SDTSVDLKLNLSSTSN at 48/230 in soybean Gm053213 (Type III)
NLKETELRLGLPGCES at 32/307 in soybean Gm038262 (Type III)
NLDATELRLGLPGTAT at 13/203 in poplar Pt015555 (Type III)
GLEITELRLGLPGSDD at 11/184 in poplar Pt010911 (Type III)
NFEETELRLGLPLSGN at 17/243 in soybean Gm008159 (Type III)
SDTAVDLKLNLSSTSN at 47/243 in soybean Gm008159 (Type III)
AFEATELRLGLPGGGG at 11/277 in rice Os041779 (Type III)
FAETIDLKLKLEPAAA at 44/277 in rice Os041779 (Type III)
NLEATELRLGLPGTAT at 13/201 in poplar Pt001236 (Type II)
SFKETELTLGLPGESR at 23/220 in poplar Pt028468 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001129 (Type III)
NLKATELRLGLPGSDE at 13/195 in poplar Pt002787 (Type III)
NFEETELRLGLPGGIG at 21/246 in poplar Pt015737 (Type III)
FSETVDLKLNLSTKES at 52/246 in poplar Pt015737 (Type III)
RFEETELRLGLPGNGG at 15/229 in poplar Pt001265 (Type III)
FSETVDLKLNLSSKEG at 44/229 in poplar Pt001265 (Type III)
NYEETELRLGLPGGAS at 22/250 in poplar Pt002101 (Type III)
FSETVDLKLNLSTKET at 53/250 in poplar Pt002101 (Type III)
NLKATELRLGLPGCDE at 14/177 in soybean Gm052266 (Type III)
NLEATELRLGLPGSDE at 18/202 in soybean Gm004012 (Type III)
DFEDTALTLRLPGSSS at 24/212 in rice Os020402 (Type III)
DLKGTELRLGLPGSHS at 32/257 in rice Os020690 (Type III)
NLKATELRLGLPGCDE at 14/204 in soybean Gm052264 (Type III)
NYKETELCLGLPGAVG at 20/277 in poplar Pt033721 (Type III)
FAETVDLKLNLQAKEG at 52/277 in poplar Pt033721 (Type III)
DLKGTELRLGLPGSES at 38/263 in rice Os001130 (Type III)
NLKETELRLGLPGTGC at 17/207 in poplar Pt040947 (Type III)
GLEITELRLGLPDAEH at 12/195 in soybean Gm022022 (Type III)
HKGYSDLALALDKLFG at 112/195 in soybean Gm022022 (Type III)
NLKATELRLGLPGTED at 17/248 in soybean Gm002569 (Type II)
NLKATELRLGLPGTEE at 8/197 in rice Os041780 (Type Ia)
NLEATELRLGLPGSDE at 14/215 in soybean Gm026656 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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