fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G09030 (NF-YB4)

Alias NF-YB4
TF Classification
FioreDBCCAAT (Click to show phylogenetic tree)
RARTFCCAAT / Dr1
AtTFDBCCAAT-HAP3
PlnTFDBCCAAT (v3.0), CCAAT (v1.0)
DATFCCAAT-HAP3
TAIR short description "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
TAIR annotation "nuclear factor Y, subunit B4" (NF-YB4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B5 (TAIR:AT2G47810.1); Has 1487 Blast hits to 1487 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 373; Plants - 505; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G09030.1 3
Entry clone (w/o stop) IE_01B06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 46982: protein binding ->protein heterodimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 18 21
soybean 1 1 24 26
rice 1 9 10
sorghum 2 8 10
physcomitrella 1 11 12
Total 2 7 70 79
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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